Setup

FastQC Summary

Summary statistics for all libraries
Filename Total Flagged As Poor Quality Sequence Length %GC
Q1_1.fq.gz 40,574,259 0 150-150 43
Q1_2.fq.gz 40,574,259 0 150-150 43
Q2_1.fq.gz 46,466,005 0 150-150 43
Q2_2.fq.gz 46,466,005 0 150-150 43
Q4_1.fq.gz 52,298,374 0 150-150 43
Q4_2.fq.gz 52,298,374 0 150-150 43
Q5_1.fq.gz 43,684,821 0 150-150 44
Q5_2.fq.gz 43,684,821 0 150-150 44
W1_1.fq.gz 46,329,465 0 150-150 43
W1_2.fq.gz 46,329,465 0 150-150 44
W2_1.fq.gz 44,097,195 0 150-150 44
W2_2.fq.gz 44,097,195 0 150-150 44
W3_1.fq.gz 45,464,120 0 150-150 43
W3_2.fq.gz 45,464,120 0 150-150 44
W4_1.fq.gz 53,931,526 0 150-150 43
W4_2.fq.gz 53,931,526 0 150-150 44
W5_1.fq.gz 41,480,106 0 150-150 43
W5_2.fq.gz 41,480,106 0 150-150 43

Read Totals

Library Sizes ranged between 40,574,259 and 53,931,526 reads.

Read totals for each library. Duplicated reads are conventionally an high overestimate at this point.

FastQC Summary

Summary of FastQC flags for each parameter

Per Base Sequence Quality

Heatmap showing mean base qualities for each library

Per Sequence Quality Scores

Heatmap showing mean sequence qualities for each library

Per Base Sequence Content

Heatmap of summed base distributions along each read

Per Sequence GC Content

GC Content Heatmap normalised to theoretical GC content in the Hsapiens Genome

GC Content Distributions for all reads showing theoretical GC content from the Hsapiens Genome

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented Summary

Total overrepresented sequences for each library

Overrepresented Sequences

## Overrepresented_sequences missing from Q1_1.fq.gz
## Overrepresented_sequences missing from Q1_2.fq.gz
## Overrepresented_sequences missing from Q2_1.fq.gz
## Overrepresented_sequences missing from Q2_2.fq.gz
## Overrepresented_sequences missing from Q4_1.fq.gz
## Overrepresented_sequences missing from Q4_2.fq.gz
## Overrepresented_sequences missing from Q5_1.fq.gz
## Overrepresented_sequences missing from Q5_2.fq.gz
## Overrepresented_sequences missing from W1_1.fq.gz
## Overrepresented_sequences missing from W1_2.fq.gz
## Overrepresented_sequences missing from W2_1.fq.gz
## Overrepresented_sequences missing from W2_2.fq.gz
## Overrepresented_sequences missing from W3_1.fq.gz
## Overrepresented_sequences missing from W3_2.fq.gz
## Overrepresented_sequences missing from W4_1.fq.gz
## Overrepresented_sequences missing from W4_2.fq.gz
## Overrepresented_sequences missing from W5_1.fq.gz
## Overrepresented_sequences missing from W5_2.fq.gz
## No overrepresented sequences were detected by FastQC

Adapter Content

Universal Adapter Content

Kmer Content

## Kmer_Content missing from Q1_1.fq.gz
## Kmer_Content missing from Q1_2.fq.gz
## Kmer_Content missing from Q2_1.fq.gz
## Kmer_Content missing from Q2_2.fq.gz
## Kmer_Content missing from Q4_1.fq.gz
## Kmer_Content missing from Q4_2.fq.gz
## Kmer_Content missing from Q5_1.fq.gz
## Kmer_Content missing from Q5_2.fq.gz
## Kmer_Content missing from W1_1.fq.gz
## Kmer_Content missing from W1_2.fq.gz
## Kmer_Content missing from W2_1.fq.gz
## Kmer_Content missing from W2_2.fq.gz
## Kmer_Content missing from W3_1.fq.gz
## Kmer_Content missing from W3_2.fq.gz
## Kmer_Content missing from W4_1.fq.gz
## Kmer_Content missing from W4_2.fq.gz
## Kmer_Content missing from W5_1.fq.gz
## Kmer_Content missing from W5_2.fq.gz
## No Kmers were detected by FastQC